PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04684g02004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 260aa    MW: 30748.8 Da    PI: 5.2801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04684g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.8e-13441340
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                              i+++ +r+  f kR++ ++KK +ELS+LCd+++++ii 
  Niben101Scf04684g02004.1  4 IQDHKKRNSAFQKRKACLIKKISELSILCDIKACMIIH 41
                              89999*******************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-5152IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-15187IPR002100Transcription factor, MADS-box
CDDcd002668.35E-15178No hitNo description
PROSITE profilePS5006612.839140IPR002100Transcription factor, MADS-box
PfamPF003197.8E-13443IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MELIQDHKKR NSAFQKRKAC LIKKISELSI LCDIKACMII HEGNNCEEIW PNDRNQVQEL  60
INLYKTQPIE DRSKRENSLC SFLVKEKKKA EIKMEKMKQK IKTEKYPTWD SRFNYLSEKE  120
LRNLAGVLEK KMENAKEKSE FLKSSRNINQ DSNQEIWDYP ELMDNFNQSI PQPISYMDNQ  180
FFQELTSDFD HVNSVGILDN GQLNIDDYEF GNSDYMKIEA EEWLVNNGII GSSSRMQPME  240
LNHYPFIYTA STQMPYGYFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484291.11e-164PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLK4D6Y43e-74K4D6Y4_SOLLC; Uncharacterized protein
STRINGSolyc11g020320.1.18e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.18e-14M-type_MADS family protein